Evolutionary computation in gene regulatory network research /
edited by Hitoshi Iba, Nasimul Noman.
- 1 online resource
Includes bibliographical references and index.
I: Preliminaries -- A Brief Introduction to Evolutionary and other Nature-Inspired Algorithms / Nasimul Noman and Hitoshi Iba -- Mathematical Models and Computational Methods for Inference of Genetic Networks / Tatsuya Akutsu -- Gene Regulatory Networks: Real Data Sources and Their Analysis / Yuji Zhang -- II: EAs for Gene Expression Data Analysis and GRN Reconstruction -- Biclustering Analysis of Gene Expression Data Using Evolutionary Algorithms / Alan Wee-Chung Liew -- Inference of Vohradsk�y's Models of Genetic Networks Using a Real-Coded Genetic Algorithm / Shuhei Kimura -- GPU-Powered Evolutionary Design of Mass-Action-Based Models of Gene Regulation / Marco S. Nobile, Davide Cipolla, Paolo Cazzaniga and Daniela Besozzi -- Modelling Dynamic Gene Expression in Streptomyces Coelicolor: Comparing Single and Multi-Objective Setups / Spencer Angus Thomas, Yaochu Jin, Emma Laing and Colin Smith -- Reconstruction of Large-Scale Gene Regulatory Network Using S-system Model / Ahsan Raja Chowdhury and Madhu Chetty -- III: EAs for Evolving GRNs and Reaction Networks -- Design Automation of Nucleic Acid Reaction System Simulated by Chemical Kinetics Based on Graph Rewriting Model / Ibuki Kawamata and Masami Hagiya -- Using Evolutionary Algorithms to Study the Evolution of Gene Regulatory Networks Controlling Biological Development / Alexander Spirov and David Holloway -- Evolving GRN-inspired In Vitro Oscillatory Systems / Quang Huy Dinh, Nathanael Aubert, Nasimul Noman, Hitoshi Iba and Yannic Rondelez -- IV: Applications of GRN with EAs -- Artificial Gene Regulatory Networks for Agent Control / Sylvain Cussat-Blanc, Jean Disset, St�ephane Sanchez and Yves Duthen -- Evolving H-GRNs for Morphogenetic Adaptive Pattern Formation of Swarm Robots / Hyondong Oh and Yaochu Jin -- Regulatory Representations in Architectural Design / Daniel Richards and Martyn Amos -- Computing with Artificial Gene Regulatory Networks / Michael A. Lones.
"This book is a step-by-step guideline for research in gene regulatory networks (GRN) using evolutionary computation (EC)"--